RNAstat is a program written in C++ designed to calculate nucleotide statistics, convert original RNA sequences into a secondary structure coded dataset, generate consensus sequence from an alignment and convert sequences from an alignment into dot-bracket RNA structure format.

Program description:


Download RNAstat beta version for Windows

Reference: Subbotin, S.A., Sturhan, D., Vovlas, N., Castillo, P., Tanyi Tambe, J., Moens, M. and Baldwin, J.G. (2006). Application of secondary structure model of rRNA for phylogeny: D2-D3 expansion segments of the LSU gene of plant-parasitic nematodes from the family Hoplolaimidae Filipjev, 1934. Molecular Phylogenetics and Evolution 43: 881-890.

Acknowledgements. The support from the US National Science Foundation grant DEB 0228692 and USDA grant 2005-00903 are acknowledged.

SECconverter is a program written in C++ designed to convert dot-bracket RNA structure format into MrBayes command block with stem and loop partitions under the complex model.

Program description:
Download SECconverter beta version for Windows

Reference: Vovlas, N., Subbotin, S.A., Troccoli, A., Liebanas, G. and Castillo, P. (2008). Description and molecular characterisation of Rotylenchus montanus sp. n. and recognition of R. jaeni comb. n. as a separate species with approaches to molecular phylogeny of the genus Rotylenchus (Nematoda, Tylenchida). Zooligica Scripta (in press).

Acknowledgements. The support from the US National Science Foundation PEET grant DEB 0731516 is acknowledged.



This page is maintained by Sergei A. Subbotin